Papers and Publications

Hoff, P.D., Niu, X. and Wellner, J.A. "Information bounds for Gaussian copulas"
pdf

Raftery, A.E., Niu, X., Hoff, P.D. and Yeung, K.Y. "Fast Inference for the Latent Space Network Model Using a Case-Control Approximate Likelihood"
to appear in Journal of Computational and Graphical Statistics
pdf

Hoff, P.D. and Niu, X. "A covariance regression model"
to appear in Statistica Sinica
pdf , software

Oron, A., Azriel, D. and Hoff, P. (2011) "Dose-finding designs: the role of convergence properties"
International Journal of Biostatistics , vol. 7, iss. 1, article 39
pdf

Westveld, A. and Hoff, P.D. (2011) "A mixed effects model for longitudinal relational and network data, with applications to international trade and conflict"
Annals of Applied Statistics, vol. 5, 843-872.
pdf

Hoff, P.D. (2011) "Separable covariance arrays via the Tucker product, with applications to multivariate relational data" (with discussion)
Bayesian Analysis, vol. 6, 179-196.
pdf, software .

Hoff, P.D. (2011) "Hierarchical multilinear models for multiway data"
Computational Statistics and Data Analysis, vol. 55, 530-543.
pdf , software .

Bronner, M.P., Skacel, M., Crispin, D.A., Hoff, P.D., Emond, M.J., Lai, L.A., Tubbs, R.R., Brentnall T.A., Rabinovitch, P.S. (2010) "Array Comparative Genomic Hybridization in Ulcerative Colitis Neoplasia: Single Non-dysplastic Biopsies Distinguish Progressors from Non-progressors"
Modern Pathology, vol. 23, 1624-1633.

Hoff, P.D. (2009) "Multiplicative latent factor models for description and prediction of social networks"
Computational and Mathematical Organization Theory , vol. 15, 261-272.
abstract , pdf .

Hoff, P.D. (2009) "A hierarchical eigenmodel for pooled covariance estimation"
Journal of the Royal Statistical Society, Series B, vol. 71, 971-992.
pdf , software .

Hoff, P.D. (2009) "A first course in Bayesian statistical methods"
Springer Texts in Statistics.
webpage

Hoff, P.D. (2009) "Simulation of the matrix Bingham-von Mises-Fisher distribution, with applications to multivariate and relational data"
Journal of Computational and Graphical Statistics, vol. 18, 438-456.
pdf , software.

Krivitsky, P., Handcock, M., Raftery A. and Hoff, P. (2009) "Representing Degree Distributions, Clustering, and Homophily in Social Networks with Lat ent Cluster Random Effects Models"
Social Networks , vol. 31, 204-213.
pdf .

Oron, A. and Hoff, P. (2009) "The K-in-a-row Up-and-Down design, revisited"
Statistics in Medicine, vol. 28, 1805-1820.
abstract, pdf .

Logan, J.A., Hoff, P.D., and Newton, M.A. (2008) "Two-Sided Estimation of Mate Preferences for Similarities in Age, Education, and Religion"
Journal of the American Statistical Association, vol. 103, no. 482, 559-569.
abstract , pdf .

Hoff, P.D. (2008) "Modeling homophily and stochastic equivalence in symmetric relational data."
Advances in Neural Information Processing Systems 20 , pp. 657-664. eds. J.C. Platt, D. Koller , Y. Singer and S. Roweis. MIT Press.
pdf , software

Hoff, P.D. (2008) "Rank likelihood estimation for continuous and dicrete data."
ISBA bulletin, pp. 8-10.
pdf software

Pearson, C.R., Micek, M.A., Simoni, J.M., Hoff, P.D., Matediana, E., Martin, D.P., Gloyd, S.S. (2007) "Randomized control trial of peer-delivered, modified directly observed therapy for HAART in Mozambique"
JAIDS, vol. 46 no. 2, 238-244.

Pearson, C.R., Kurth, A.E., Cassels, S., Martin, D.P., Simoni, J.M., Hoff, P.D., Matediana, E., Gloyd, S.S. (2007) "Modeling HIV transmission risk among Mozambicans prior to their initiating highly active antiretroviral therapy"
Aids Care, vol. 19 no. 5, 594-604.

Hoff, P.D. (2007) "Extending the rank likelihood for semiparametric copula estimation"
Annals of Applied Statistics, vol. 1 no. 1, 265-283.
pdf, software .

Hoff, P.D. (2007) "Model averaging and dimension selection for the singular value decomposition"
Journal of the American Statistical Association, vol. 102 no. 478, 674-685.
pdf, software .

Pearson, C.R., Simoni, J.M., Hoff, P., Kurth, A.E. and Martin, D.P. (2007) "Assessing Antiretroviral Adherence via Electronic Drug Monitoring and Self-Report: An Examination of Key Methodological Issues "
AIDS and Behavior, vol. 11 no.2, 161-173.
abstract , pdf

Hoff, P.D. (2007) "Discussion of Handcock, Raftery and Tantrum 'Model-based clustering for social networks'"
Journal of the Royal Statistical Society, Series A , vol. 170 no.2, 339.
pdf .

Ward, M.D. and Hoff, P.D. (2007) "Persistent Patterns of International Commerce"
Journal of Peace Research, vol. 44 no. 2, 157-175. abstract , postscript , pdf

Oron, A. and Hoff, P. (2006) "Kruskal-Wallis and Friedman type tests for nested effects in hierarchical designs"
CSSS Working Paper no. 68. pdf .

Shortreed, S., Handcock, M.S. and Hoff, P.D. (2006) "Positional estimation within the latent space model for networks"
Methodology, vol. 2 no. 1, 24-33.
abstract , pdf , software .

Hoff, P.D. (2006) "Model-based subspace clustering"
Bayesian Analysis, vol. 1 no. 2, 321-344.
abstract , pdf , software .

Hoff, P.D. (2005) "Subset clustering of binary sequences, with an application to genomic abnormality data"
Biometrics , vol. 61 no. 4, 1027-1036.
abstract , postscript , pdf

Hoff, P.D. (2005) "Bilinear Mixed-Effects Models for Dyadic Data"
Journal of the American Statistical Assosciation, vol. 100, no. 469, 286 - 295.
abstract , postscript , pdf , software .

Koprowicz, K.M., Emerson, S.S., and Hoff, P.D. (2005) "A Comparison of Parametric and Coarsened Bayesian Inference in the Presence of a Known Mean Variance Relationship"
University of Washington Biostatistics Working Paper no. 251
abstract , pdf .

Hoff, P.D. (2004) "Discussion of `Clustering objects on subsets of attributes,' by J. Friedman and J. Meulman,"
Journal of the Royal Statistical Society,Series B, vol 66, no. 4, 845.
pdf .

Haigis, K.M., Hoff, P.D., White, A., Shoemaker, A.R., Halberg, R.B. and Dove, W.F. (2004) "Tumor regionality in the mouse intestine reflects the mechanism of loss of Apc function"
Proceedings of the National Academy of Sciences, vol. 101, no. 26, 9769-9773.
abstract .

Hoff, P.D., and Ward, M.D. (2004) "Modeling Dependencies in International Relations Networks,"
Political Analysis, vol. 12, no. 2, 160-175.
abstract , postscript , pdf

Hoff, P.D. (2003) "Random Effects Models for Network Data,"
in Dynamic Social Network Modeling and Analysis: Workshop Summary and Papers, 303-312, Ronald Breiger, Kathleen Carley, and Philippa Pattison, eds., Washington, D.C., The National Academies Press.
abstract , postscript , pdf .

Ward, M.D., Hoff, P.D., and Lofdahl, C.L. (2003) "Identifying International Networks: Latent Spaces and Imputation,"
in Dynamic Social Network Modeling and Analysis: Workshop Summary and Papers , 345-359, Ronald Breiger, Kathleen Carley, and Philippa Pattison, eds., Washington, D.C., The National Academies Press.
pdf .

Hoff, P.D. (2003) "Bayesian Methods for Partial Stochastic Orderings,"
Biometrika , vol. 90, no. 2, 303-317.
abstract , postscript , pdf .

Hoff, P.D. (2003) "Nonparametric Estimation of Convex Models via Mixtures,"
Annals of Statistics , vol. 31, no. 1, 174-200.
abstract , postscript , pdf .

Westveld, A.H. and Hoff, P.D. (2003) "A Statistical View of Learning in the Centipede Game"
CSSS Working Paper no. 37
abstract , postscript , pdf

Hoff, P.D. (2003) "Nonparametric Modeling of Hierarchically Exchangeable Data"
UW Statistics Department Technical Report no. 421.
abstract , postscript , pdf .

Hoff, P.D., Raftery, A.E., and Handcock, M.S. (2002) "Latent Space Approaches to Social Network Analysis"
Journal of the American Statistical Association , vol. 97, no. 460, 1090-1098.
abstract , postscript , pdf .

Hoff, P.D., Halberg, R.B., Shedlovsky, A., Dove, W.F., and Newton, M.A. (2002) "Identifying Carriers of a Genetic Modifier Using Nonparametric Bayes Methods,"
in Case Studies in Bayesian Statistics 5, Springer-Verlag, 327-342
abstract , postscript , pdf .

Logan, J.A., Hoff, P.D., and Newton, M.A. (2002) "A Parametric Two-Sided Model of Marriage"
CSSS Working Paper no. 15. abstract , postscript , pdf .

Hoff, P.D., (2000) "Constrained Nonparametric Maximum Likelihood via Mixtures,"
The Journal of Computational and Graphical Statistics, vol. 9, no. 4, 633-641.
abstract , postscript , pdf .

Halberg, R., Katzung, D., Hoff, P., Moser, A., Cole, C., Lubet, R., Donehower, L., Jacoby, R. Dove, W. (2000), "Tumorigenesis in the Multiple Intestinal Neoplasia Mouse: Redundancy of Negative Regulators and Specificity of Modifiers,"
Proceedings of the National Academy of Sciences 97, 3461-3466.
abstract,pdf.

Shepel, L.A., Lan, H., Haag, J.D., Brasic, G.M., Gheen, M.E., Simon, J.S., Hoff, P., Newton, M.A., and Gould, M.N. (1998), Genetic Identification of Multiple Loci that Control Breast Cancer Susceptibility in the Rat,"
Genetics 149, 289-299.
abtract,pdf.

R-software

sbgcop - R-functions for semiparametric estimation of a multivariate Gaussian copula model.
bsvd - R-functions for model-averaging and dimension selection for the singular value decomposition.
mbsc - R-functions for model-based subspace clustering.
gbme - R-functions for fitting generalized bilinear mixed effects models to dyadic and social network data
latent space analysis of Florentine family marriage network

PhD Thesis

Hoff, P.D. (2000) "Constrained Nonparametric Estimation via Mixtures" Doctoral Dissertation, Department of Statistics, UW-Madison.
abstract , postscript , pdf .

This thesis won a Leonard J. Savage award for outstanding doctoral dissertation in Bayesian theory and methods (2000).