10.2 Sample lm_ibdtests parameter file

Parameter files for lm_ibdtests may be found in the `Nonparametric' subdirectory of `MORGAN-examples'.

input pedigree file '../ped73_ph.ped' input pedigree record trait 1 integer 3 input marker data file '../ped73.marker.missing' output sampler seeds only input seed file '../sampler.seed' output overwrite seed file '../sampler.seed' select all markers set affected individuals trait 1 sample by scan set L-sampler probability 0.5 set MC iterations 3000 compute ibd statistics set ibd measures Spairs Srobdom set ibd tests norm permu set ibd permutations 999 compute scores every 100 iterations