10.3 Sample lm_ibdtests output

Under the subdirectory `Nonparametric/', run the example with the following command

lm_ibdtests ped73_ibdt_IBD.par

Output that has test statistics and p values is shown below:

************************************ p Value for Permutation Test for IBD ************************************ pos(Haldane cM) Spairs Srobdom locus male female p-value p-value marker-1 0.000 0.000 0.9020 0.9300 marker-2 10.000 10.000 0.8780 0.8450 marker-3 20.000 20.000 0.8130 0.7800 marker-4 30.000 30.000 0.5080 0.5190 marker-5 40.000 40.000 0.2550 0.2480 marker-6 50.000 50.000 0.2950 0.2510 marker-7 60.000 60.000 0.3850 0.5090 marker-8 70.000 70.000 0.5100 0.6660 marker-9 80.000 80.000 0.6610 0.7750 marker-10 90.000 90.000 0.5640 0.7470 ******************************* p Value for Normal Test for IBD ******************************* pos(Haldane cM) locus male female Spairs p-value Srobdom p-value marker-1 0.000 0.000 -0.7843 0.7951 -0.2867 0.6167 marker-2 10.000 10.000 -0.9574 0.8166 -0.3841 0.6567 marker-3 20.000 20.000 -1.1825 0.8816 -0.2260 0.5692 marker-4 30.000 30.000 -0.6437 0.7381 -0.1272 0.5552 marker-5 40.000 40.000 0.2478 0.4103 0.0986 0.4743 marker-6 50.000 50.000 -0.2270 0.5752 -0.3275 0.6252 marker-7 60.000 60.000 -0.1503 0.5612 -0.3514 0.6437 marker-8 70.000 70.000 -0.3096 0.6372 -0.3587 0.6557 marker-9 80.000 80.000 -0.4877 0.6902 -0.2706 0.6037 marker-10 90.000 90.000 -0.2924 0.6222 -0.1136 0.5662