PANGAEA RELEASES

Table of Release dates for various versions

This list gives only a brief history. More details can be found with the information for separate packages. Only the latest release of each package remains available for download.

MORGAN 3 , IBD-packages, MORGAN 2 , ALBERT, Eclipse , MCLEEPS , Loki 2 , Pedfiddler, Other

MORGAN Version 3
Version Release date Description Contact Size
MORGAN 3.3.2
Tutorial
January 2017
(New Year)
MORGAN-3.3.2 tutorial; online version and PDF and
single-file html and plain text
Elizabeth Thompson 700kb
649kb and 484kb
MORGAN 3.3.2 July 2016
(Bastille Day)
C-code source and plain text documentation.
Full package, with new program base_trait_lods, and other improvements.
Steven Lewis and
Elizabeth Thompson
6843kb
MORGAN 3.3.1 February 2016
(Leap Day)
C-code source and plain text documentation.
Full package, with updated 6 subprograms of ibd_create, and other improvements.
Steven Lewis and
Elizabeth Thompson
6803kb
MORGAN 3.3
Tutorial and
Examples
May 2015
(Memorial Day)
MORGAN-3 tutorial; online version and
PDF and gzipped html
Examples in gzipped tar file
Updated with IBD_Haplo Programs and Examples.
Elizabeth Thompson 674kb
623kb
2760kb
MORGAN 3.3 May 2015
(Memorial Day)
C-code source and plain text documentation.
Full package, with 5 new subprograms of ibd_create.
Steven Lewis and
Elizabeth Thompson
7383kb
MORGAN 3.2
Online Tutorial
January 2014
(New Year's Day)
MORGAN-3 tutorial; online version
Updated for MORGAN 3.2 (but no new Examples files as yet).
Elizabeth Thompson
MORGAN 3.2 December 2013
(Hanukkah)
C-code source and plain text documentation.
Full package, with updated ibd_haplo and gl_lods.
Steven Lewis and
Elizabeth Thompson
2808kb
MORGAN 3.1.1
Online Tutorial
July 2013
(July 4 holiday)
MORGAN-3 tutorial; online version
Minor updates to online release only.
Elizabeth Thompson
MORGAN 3.1.1
Tutorial and
Examples
December 2012
(Christmas)
MORGAN-3 tutorial; online version and
PDF and gzipped paginated html
Examples in gzipped tar file
Updated with new IBD_Haplo Chapter and Examples.
Elizabeth Thompson 747kb
126kb
144kb
MORGAN 3.1.1 November 2012
(Veterans Day)
C-code source and plain text documentation.
Full package, with fully updated IBD_Haplo.
Steven Lewis and
Elizabeth Thompson
2804kb
MORGAN 3.1 April 2012
(Easter)
C-code source and plain text documentation.
Full package, with fully integrated IBD_Haplo.
Steven Lewis and
Elizabeth Thompson
2406kb
lnkg2lmlnk script
and examples
March 2012
(Spring break)
Improved updated version of Rothstein lnkg2lmm script
to transform from LINKAGE to MORGAN: updated
for MORGAN 3.0.3 lm_linkage program.
Also includes example in gzipped tar.
Ellen Wijsman
and Hiep Nguyen
23kb

1.5kb
lnkg3lmm script
and examples
December 2011
(Christmas)
Updated version of Rothstein lnkg2lmm script
to transform from LINKAGE to MORGAN: updated
for MORGAN 3.0.3 lm_linkage program.
Also includes example in gzipped tar.
Elizabeth Thompson 94kb

29kb
MORGAN 3.0.3
Tutorial and
Examples
December 2011
(Christmas)
MORGAN-3 tutorial; online version and
PDF and gzipped paginated html
Examples in gzipped tar file
Minor corrections to tutorial and examples files.
Elizabeth Thompson 723kb
232kb
104kb
MORGAN 3.0.3 October 2011
(Halloween)
C-code source and plain text documentation.
Full package, (including IBD_Haplo).
Steven Lewis and
Elizabeth Thompson
2654kb
MORGAN 3.0.3
Tutorial and
Examples
October 2011
(Halloween)
MORGAN-3 tutorial; online version and
PDF and gzipped paginated html
Examples in gzipped tar file
Elizabeth Thompson and
Adam Gustafson
723kb
222kb
207kb
MORGAN 3.0.2 April 2011
(May Day)
C-code source and plain text documentation.
Full package, (excluding Schnell and IBD_Haplo).
Steven Lewis and
Elizabeth Thompson
1533kb
MORGAN 3.0.1 September 2010
(Labor Day)
C-code source and plain text documentation.
Full package, including IBD_Haplo 2.0 directory.
Steven Lewis and
Elizabeth Thompson
2108kb
MORGAN 3.0 November 2009
(Veterans' Day)
C-code source and plain text documentation:
full package.
Steven Lewis and
Elizabeth Thompson
1465kb
MORGAN 3.0 (beta2) March 2009 (Equinox) C-code source and plain text documentation:
full package.
Elizabeth Thompson 1394kb
MORGAN 3.0 (beta) March 2008 (Easter) C-code source and plain text documentation:
partial package only
Elizabeth Thompson 664kb

IBD packages
Version Release date Description Contact Size
SMARTree May 2014 Mathematica code for the analyses of Zheng et al
(2014, Journal of Molecular Evolution).
Includes documentation file.
Chaozhi Zheng
8148kb
JointIBD February 2014
(Presidents' Day)
Mathematica code for the analyses of Zheng et al
(2014, Journal of Computational Biology).
Includes documentation file.
Chaozhi Zheng
4931kb
IBD_Create V2.0 December 2013
(Hanukkah)
Programs to create IBD patterns at varying LD
includes simpop_fgl, beaglesim, fgl2haplo, fgl2ibd
Includes examples and documentation files.
Fiona Grimson and
Elizabeth Thompson
9619kb
IBDhaploRtools 1.5 March 2013
(Easter)
An R-package of tools to analyze ibd_haplo output,
includes example data files and PDF tutorial.
Released to CRAN
Fiona Grimson 248kb
SAGMB_files January 2012
(MLK Day)
The files and instructions to recreate the IBDmerge analyses
of Glazner and Thompson (2012). Gzipped tar file.
Chris Glazner and
Elizabeth Thompson
2803kb
IBDhaploRtools 1.2 November 2011
(UW 150th birthday)
An R-package of tools to analyze ibd_haplo output,
includes example data files and PDF tutorial.
Gzipped tar file.
Marshall Brown and
Elizabeth Thompson
209kb
IBD_Create October 2011
(Halloween)
Programs to create IBD patterns at varying LD
includes simu, beaglesim, ibd_states
Includes examples and documentation files.
Elizabeth Thompson
and Chris Glazner
7874kb
IBD_Haplo 2.1 October 2011
(Halloween)
An add-on for MORGAN-3; C-code source,
and gold examples: INCLUDED IN MORGAN 3.0.3 above
Elizabeth Thompson N/A
IBDhaploRtools 1.1 May 2011
(Memorial Day)
An R-package of tools to analyze ibd_haplo output,
includes example data files and PDF tutorial.
Gzipped tar file.
Marshall Brown and
Elizabeth Thompson
229kb
IBDhaploRtools 1.0 March 2011
(St Patricks Day)
An R-package of tools to analyze ibd_haplo output,
includes example data files and PDF tutorial.
Gzipped tar file.
Marshall Brown and
Elizabeth Thompson
411kb
IBD_Haplo 2.0 August 2010
(Labor Day)
An add-on for MORGAN-3; C-code source,
examples and plain text documentation.
Added simuation program and python script.
Chris Glazner and
Elizabeth Thompson
514kb
IBDgraph 2.0 August 13, 2010:
Updated Aug 30, 2010
Another add-on for MORGAN-3; C-code source for library,
now choice of python calling script or C program,
examples and plain text documentation
Lucas Koepke and
Elizabeth Thompson
94kb
149kb
IBDgraph March 2010
Updated April 2010
Another add-on for MORGAN-3; C-code source for library,
python calling script, examples and plain text documentation
Hoyt A. Koepke and
Elizabeth Thompson
82kb
112 kb
IBD_Haplo December 2009
(Christmas)
An add-on for MORGAN-3; C-code source,
examples and plain text documentation
Elizabeth Thompson 359kb

MORGAN Version 2 (including Tutorual and Examples releases)
Version Release date Description Contact Size
MORGAN 2.9 Tutorial September 2010 (Labor Day) Full release of Tutorial for 2.9 : full tar
and paginated html only (both gzipped)
Marshall Brown and Elizabeth Thompson 993 kb
222kb
MORGAN 2.9 Examples September 2010 (Labor Day) Updated tutorial examples file (gzipped) for use with MORGAN 2.9 Elizabeth Thompson 75kb
MORGAN 2.9 Tutorial December 2009 (Christmas) Online release only: full download release after testing Elizabeth Thompson
MORGAN 2.9 Examples December 2009 (Christmas) Updated tutorial examples file for use with MORGAN 2.9 Elizabeth Thompson 97kb
MORGAN 2.9 November 2008 (Thanksgiving) C-code source and plain text documentation:
Bug affecting lm_multiple is fixed.
Elizabeth Thompson
and Steven Lewis
1393kb
MORGAN 2.9 executables September 2008 Win32 (tested WinXP) executables.
Mac OSX (tested 10.5 Leopard) Universal Binary
Michael Na Li
Univ. Minnesota
6527kb
7343kb
MORGAN 2.9 August 2008 (Labor Day) C-code source and plain text documentation Elizabeth Thompson
and Steven Lewis
1393kb
MORGAN 2.8.3 tutorial examples April 2008 Updated tutorial examples file for use with MORGAN 2.8.3 Elizabeth Thompson 116kb
MORGAN 2.8.3 March 2008 (Easter) C-code source and plain text documentation Elizabeth Thompson 1427kb
MORGAN-tutorial for 2.8.1 August 2007 Updated to 2.8.1, and with new examples
Audrey Fu
MORGAN 2.8.2 April 2007 (Easter) C-code source and plain text documentation Elizabeth Thompson 1184kb
MORGAN 2.8.1 April 2006 (Easter) C-code source and plain text documentation Myrna Jewett 1246kb
MORGAN 2.7/2.8- Examples April 2006 (Easter) Examples checked and updated to current tutorial release. Elizabeth Thompson 150kb
MORGAN-tutorial 2.7/2.8 Feb 2006 (Presidents' Day) Updated to 2.8: but with no
lm_map or lm_ibdtests examples
Adele Mitchell
MORGAN 2.8 December 2005 (Christmas) C-code source and plain text documentation Myrna Jewett 1212kb
MORGAN 2.7 August 2005 (before Labor Day) C-code source and plain text documentation Myrna Jewett 1176kb
MORGAN 2.6.01 June 2004 (Summer Solstice) C-code source and plain text documentation Myrna Jewett 616kb
MORGAN-tutorial 2.6 June 2004 (Summer Solstice) Updated to 2.6.01: with new examples Myrna Jewett
MORGAN 2.6 February 2004 (Leap Day) Unix/linux source and documentation Myrna Jewett 614 kb
MORGAN-tutorial 2.5 March 2003 test version only Michael Li 548 kb
MORGAN 2.5 November 2002 (Veterans' Day) Unix/linux source and documentation Myrna Jewett 985 kb
MORGAN 2.5 Executables for windows (win32) Michael Li 1.34 Mb
MORGAN 2.4.1 June 2002 (Queen's Golden Jubilee) Unix/linux source and documentation Myrna Jewett 892 kb
MORGAN 2.4 February 2002 (Presidents' Day) Myrna Jewett 789 kb
MORGAN 2.3.2 November 2001 (Veterans' Day) Bug fix files for 2.3.2 added Myrna Jewett 779 kb
MORGAN 2.3.2 September 2001 Myrna Jewett
MORGAN 2.3.1 May 2001 (Memorial Day) Bug fixed Myrna Jewett 734 kb
MORGAN 2.3.1 April 2001 (Easter) Myrna Jewett
MORGAN 2.3 December 2000 (Christmas) Myrna Jewett 704 kb
MORGAN 2.2 April 2000 (Good Friday) Myrna Jewett 226 kb
MORGAN 2.1 May 1999 (Memorial Day) Myrna Jewett 206 kb
MORGAN 2.0.1 Feb 1998 (Presidents' Day) Myrna Jewett 518 kb
MORGAN 2.0 Nov 1997 (Thanksgiving) Myrna Jewett

ALBERT
ALBERT May 2006 Adele Mitchell

Eclipse
Eclipse 1.1 December 2003 (Christmas) Solveig Sieberts
Eclipse 1.0 Sept 2003 (Labor Day) Solveig Sieberts
Eclipse 0.3 November 2001 (Veterans' Day) Solveig Sieberts
Eclipse 0.2 Sept 2001 (Labor Day) Solveig Sieberts
Eclipse 0.1 Christmas 2000 Solveig Sieberts

MCLEEPS
MCLEEPS V1.1 Sept 2001 (Labor Day) Eric Anderson
MCLEEPS V1.0.1 December 2000 (St. Nicolas) Eric Anderson, Ellen Williamson
MCLEEPS V1.0 Sept 2000 (Labor Day) Eric Anderson, Ellen Williamson

Loki Version 2
Version Release date Contact
Loki 2.4.5 March, 2003 Simon Heath
Loki 2.4 August, 2002 Simon Heath
Loki 2.3 November 11, 2000 (Veterans' Day) Simon Heath
Loki 2.1.4r2 July 4, 1998 Simon Heath
Loki 2.1.4 March 17, 1998 (St Patrick's Day) Simon Heath
Loki 2.1.3 March 1, 1998 (St David's Day) Simon Heath
Loki 2.1.2 Dec 1997 (Christmas) Simon Heath

Pedfiddler
Version Release date Comment Contact Size
Pedfiddler v0.6 April 2010 Zip file of Windows executable
and pdf instructions
J.C.Loredo-Osti 884 kb
60 kb
Pedfiddler v0.6 September 2008 Linux source: tar, gzipped J.C.Loredo-Osti 765 kb
Pedfiddler v0.5
Mac Binaries
September 2008 Mac OSX Binaries (OK for Intel and PPC G4/G5). Tested only under Mac OS 10.5 Leopard. Michael Na Li 1052 kb
Pedfiddler v0.5 August 2005 Unix/linux: source /executables. (gzipped tar)
Windows 2000 versions: executables. (zip file)
J.C.Loredo-Osti various.
264 kb
Pedfiddler v0.4 March 2003 Unix/linux and Windows 2000 versions J.C.Loredo-Osti
Pedfiddler v0.31 November 2002 (Election Day: USA) Various fixes. Also Windows version. J.C.Loredo-Osti, Michael Li
Pedfiddler v0.3 November 2001 (Thanksgiving) bug-fixed file; binaries removed J.C.Loredo-Osti, Ken Morgan
Pedfiddler v0.3 November 2001 (Veterans' Day) Source and true-64 binaries J.C.Loredo-Osti, Ken Morgan
Pedfiddler v0.2 Christmas 2000 - J.C.Loredo-Osti, Ken Morgan

MORGAN Version 1
(Note MORGAN 1.x is now superceded by MORGAN versions 2.3 and subsequent)
Version Release date Contact
MORGAN 1.1.2 July 4, 1999 Elizabeth Thompson
MORGAN 1.1.1 July 4, 1997 Elizabeth Thompson
MORGAN 1.1 May 1997 (Memorial Day) Elizabeth Thompson
Gibbs 1.0 July 4, 1996 Elizabeth Thompson

InSegT
Version Release date Contact
InSegT_V1.1 Sept 1999 (Labor Day) Jochen Kumm
InSegT Jan 1999 (New Year's Day) Jochen Kumm

Other Packages
Version Release date Contact
Pedpack Elizabeth Thompson, Alun Thomas
Borel Elizabeth Thompson, Ian Painter
Hardy Elizabeth Thompson. Sun Wei Guo


UW - Statistics: Tuesday, 03-Jan-17 Contact: Elizabeth Thompson <eathomp@u.washington.edu>